rs32451563 SNP Detail

Summary

• ID
  rs32451563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31203743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CCTCCAAGGA AACAGAGCAT
  Y
  TTCTGAACTG TATTCAAACA GTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45797180	mCV22340590	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss47667777	NES10247050	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	C	T	T		C	T	C	C
ss321503413	CHEV_5_31348772	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32451563					SNP	C	T	C	T	C	T	C	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667777	NES10247050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31203743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15696	CpG island 15696	1336 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	123 bp distal
Rr117832	regulatory region 117832	1943 bp distal
Rr125009	regulatory region 125009	857 bp proximal
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr50520	transcription start site region 50520	1459 bp downstream
Tssr50521	transcription start site region 50521	1480 bp downstream
Tssr50522	transcription start site region 50522	1599 bp downstream
Tssr50523	transcription start site region 50523	1615 bp downstream
Tssr50524	transcription start site region 50524	1837 bp downstream