rs32452366 SNP Detail

Summary

• ID
  rs32452366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31203644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTCCAA AAACCTACAG
  TCAGCTTGAA ACCATCGACT TGTGGCTCCC TCACTACTGG CCTCCTCACA CCAGCACTCA
  CTCACACACA CACACACACA CACACACACA CACACACACA TACAGACACA CAATAAAAAA
  GAATTTTTCA CAGGTATTCA CCAGTGCTCC AATCTCACTA GTCCCAAGAC TAAGAAAGGA
  R
  CAGAGTGCTA ACTGTAGTCA GTCATTCATG GAACAGTATA GATTTCAACT ATTCTAGTGA
  CAGATTAATA TACCCTGCCC TCCAAGGAAA CAGAGCATCT TCTGAACTGT ATTCAAACAG
  TTGGGCACAT ATTGCCTAGT TGGCAGGGTG CGGTTCCCAC AGACTAATCC TGAACTATAA
  GCCTCACAGG ACAAAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47667780	NES10247049	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32452366					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667780	NES10247049	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31203644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15696	CpG island 15696	1435 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	24 bp distal
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr50520	transcription start site region 50520	1558 bp downstream
Tssr50521	transcription start site region 50521	1579 bp downstream
Tssr50522	transcription start site region 50522	1698 bp downstream
Tssr50523	transcription start site region 50523	1714 bp downstream
Tssr50524	transcription start site region 50524	1936 bp downstream