rs32452369 SNP Detail

Summary

• ID
  rs32452369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31203616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTGGCT GCTTTGGGGA
  GGACATGTTT GGTTCCAAAA ACCTACAGTC AGCTTGAAAC CATCGACTTG TGGCTCCCTC
  ACTACTGGCC TCCTCACACC AGCACTCACT CACACACACA CACACACACA CACACACACA
  CACACACATA CAGACACACA ATAAAAAAGA ATTTTTCACA GGTATTCACC AGTGCTCCAA
  Y
  CTCACTAGTC CCAAGACTAA GAAAGGAACA GAGTGCTAAC TGTAGTCAGT CATTCATGGA
  ACAGTATAGA TTTCAACTAT TCTAGTGACA GATTAATATA CCCTGCCCTC CAAGGAAACA
  GAGCATCTTC TGAACTGTAT TCAAACAGTT GGGCACATAT TGCCTAGTTG GCAGGGTGCG
  GTTCCCACAG ACTAATCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47667783	NES10247047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32452369					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667783	NES10247047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31203616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15696	CpG island 15696	1463 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	within coordinates
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr50520	transcription start site region 50520	1586 bp downstream
Tssr50521	transcription start site region 50521	1607 bp downstream
Tssr50522	transcription start site region 50522	1726 bp downstream
Tssr50523	transcription start site region 50523	1742 bp downstream
Tssr50524	transcription start site region 50524	1964 bp downstream