rs32458080 SNP Detail

Summary

• ID
  rs32458080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40505747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA ATGAAACAGG CAATATCAGG
  W
  TTAATAAATG GTGTGAGGGG AGAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45149884	mCV24153054	ABI	CRAMUS_MOUSE	f	SNP	A	A						T
ss60721671	NES16361081	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	A	T	T	T	A	T	T
ss148982319	ENSMUSSNP5585241	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32458080					SNP	A	A	T	T	T	T	T	T	A	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721671	NES16361081	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40505747 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	1172 bp downstream
Il18r1	interleukin 18 receptor 1	within coordinates
Rr16188	regulatory region 16188	747 bp distal
Rr29358	regulatory region 29358	346 bp distal
Rr33590	regulatory region 33590	454 bp proximal
Rr33591	regulatory region 33591	1454 bp proximal
Rr371160	regulatory region 371160	248 bp downstream
Tssr6465	transcription start site region 6465	889 bp downstream
Tssr6466	transcription start site region 6466	858 bp downstream
Tssr6467	transcription start site region 6467	612 bp downstream
Tssr6468	transcription start site region 6468	581 bp downstream
Tssr6469	transcription start site region 6469	509 bp downstream
Tssr6470	transcription start site region 6470	476 bp downstream
Tssr6471	transcription start site region 6471	377 bp downstream
Tssr6472	transcription start site region 6472	285 bp downstream