rs32458464 SNP Detail

Summary

• ID
  rs32458464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGCTCCC AGCCTTCACT
  CAGACCCAAG GACTATGAAG TTGATGCAAC TCTGAAATCT CTCAATAACC AGATTGAGAC
  CCTTCTCACT CCTGAAGGCT CTAGAAAGAA CCCTGCTCGC ACGTGCCGGG ACTTAAGACT
  CAGCCACCCA GAGTGGAACA GCGGTGGGTT GAACATTCAA ACCACACTGG TCCCTCATAC
  R
  CCAACCTTTC CAAAAATCTA TGTCCATTGA TCTTTAGAAC AAACACGTAT TTGGGCCCAA
  AAATTCTACA CTATCAAAAC TTATACCGAG TTAATGAAAC ATCACTTTCT TCCTCTGCCC
  ACATCCACCC TTAAGTCTGT TTAGTTGTTT ATCTGTTTAC TACCAGGACT AGGGATTAAA
  TATCAGGCCT TAGACATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230116	MGP_WTSI_6_4488074	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32458464					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230116	MGP_WTSI_6_4488074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538074 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	Intron
Tssr1769	transcription start site region 1769	94 bp downstream
Tssr1770	transcription start site region 1770	581 bp upstream
Tssr54726	transcription start site region 54726	276 bp downstream
Tssr54727	transcription start site region 54727	195 bp downstream
Tssr54728	transcription start site region 54728	118 bp downstream
Tssr54729	transcription start site region 54729	64 bp downstream
Tssr54730	transcription start site region 54730	542 bp upstream
Tssr54731	transcription start site region 54731	597 bp upstream
Tssr54732	transcription start site region 54732	617 bp upstream
Tssr54733	transcription start site region 54733	1393 bp upstream
Tssr54734	transcription start site region 54734	1404 bp upstream
Tssr54735	transcription start site region 54735	1418 bp upstream
Tssr54736	transcription start site region 54736	1442 bp upstream
Tssr54737	transcription start site region 54737	1464 bp upstream
Tssr54738	transcription start site region 54738	1502 bp upstream
Tssr54739	transcription start site region 54739	1517 bp upstream
Tssr54740	transcription start site region 54740	1581 bp upstream
Tssr54741	transcription start site region 54741	1932 bp upstream