rs32458465 SNP Detail

Summary

• ID
  rs32458465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCCCAA AAATTCTACA
  CTATCAAAAC TTATACCGAG TTAATGAAAC ATCACTTTCT TCCTCTGCCC ACATCCACCC
  TTAAGTCTGT TTAGTTGTTT ATCTGTTTAC TACCAGGACT AGGGATTAAA TATCAGGCCT
  TAGACATGCT AAGAAAATGT CTAACACAGA GCTCCATCCT CAGGCCACGT TCTACACTTT
  R
  TTTTAAGACC AGCTCTCACT ACACTGGCCT TGAATTCACT CTAGTCTTAG TGGGTCTCTT
  AAGTATTGAT TCTCCTGCCT CAGGTGGTCT AAACATCCTG GTTGGATGTT TCATCAAGTA
  AAAGGGGACT CTTAAAAATA GTCACCCCCT TCTCACTAAC TGTGGGATAG GTGATGGAAC
  AGCACCATCA AAATGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss132932205	ENSMUSSNP6608125	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs32458465					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538325 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	345 bp downstream
Tssr1770	transcription start site region 1770	330 bp upstream
Tssr54726	transcription start site region 54726	527 bp downstream
Tssr54727	transcription start site region 54727	446 bp downstream
Tssr54728	transcription start site region 54728	369 bp downstream
Tssr54729	transcription start site region 54729	315 bp downstream
Tssr54730	transcription start site region 54730	291 bp upstream
Tssr54731	transcription start site region 54731	346 bp upstream
Tssr54732	transcription start site region 54732	366 bp upstream
Tssr54733	transcription start site region 54733	1142 bp upstream
Tssr54734	transcription start site region 54734	1153 bp upstream
Tssr54735	transcription start site region 54735	1167 bp upstream
Tssr54736	transcription start site region 54736	1191 bp upstream
Tssr54737	transcription start site region 54737	1213 bp upstream
Tssr54738	transcription start site region 54738	1251 bp upstream
Tssr54739	transcription start site region 54739	1266 bp upstream
Tssr54740	transcription start site region 54740	1330 bp upstream
Tssr54741	transcription start site region 54741	1681 bp upstream