rs32458468 SNP Detail

Summary

• ID
  rs32458468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4539260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCACCG GCCGGCCCAG
  AGCCCCCCAG CTATGCATAT GTATTTCAGA ATGCGAGCAG CTTTTCTGAA TTTTTAATCA
  AACCTTCCCA CTGATGCTAC CAAATGACAC TAGAATCCAG TACACTACAG AGAAGAGAAT
  GAGGTCTGAC TCCATCTCAC AGTTTCAGAT TCTAATGAGG GAAACATTTG CAGTGATGCA
  Y
  AACTGAGTCA GATGCTCTTC TTGGATGGCC CTGCCCTCCC TAGGCAGAGC TTATGGTCCT
  TTAACAAGTG TGCCAAGTTT CCTTTAAAAG CACCCTTCTC CTAAGCCCGG GCTCTGACTC
  CATTCTGTCT CCTGTATGCA TGTATTTATT TGAGTTTTAG TATGAGGCGT CTATTTAAGA
  GTTCACACCT TCTTCTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230142	MGP_WTSI_6_4489260	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32458468					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230142	MGP_WTSI_6_4489260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4539260 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	1280 bp downstream
Tssr1770	transcription start site region 1770	592 bp downstream
Tssr54726	transcription start site region 54726	1462 bp downstream
Tssr54727	transcription start site region 54727	1381 bp downstream
Tssr54728	transcription start site region 54728	1304 bp downstream
Tssr54729	transcription start site region 54729	1250 bp downstream
Tssr54730	transcription start site region 54730	615 bp downstream
Tssr54731	transcription start site region 54731	570 bp downstream
Tssr54732	transcription start site region 54732	483 bp downstream
Tssr54733	transcription start site region 54733	207 bp upstream
Tssr54734	transcription start site region 54734	218 bp upstream
Tssr54735	transcription start site region 54735	232 bp upstream
Tssr54736	transcription start site region 54736	256 bp upstream
Tssr54737	transcription start site region 54737	278 bp upstream
Tssr54738	transcription start site region 54738	316 bp upstream
Tssr54739	transcription start site region 54739	331 bp upstream
Tssr54740	transcription start site region 54740	395 bp upstream
Tssr54741	transcription start site region 54741	746 bp upstream
Tssr54742	transcription start site region 54742	1268 bp upstream
Tssr54743	transcription start site region 54743	1283 bp upstream
Tssr54744	transcription start site region 54744	1314 bp upstream
Tssr54745	transcription start site region 54745	1326 bp upstream
Tssr54746	transcription start site region 54746	1339 bp upstream
Tssr54747	transcription start site region 54747	1370 bp upstream
Tssr54748	transcription start site region 54748	1414 bp upstream
Tssr54749	transcription start site region 54749	1583 bp upstream
Tssr54750	transcription start site region 54750	1596 bp upstream
Tssr54751	transcription start site region 54751	1604 bp upstream
Tssr54752	transcription start site region 54752	1647 bp upstream
Tssr54753	transcription start site region 54753	1669 bp upstream
Tssr54754	transcription start site region 54754	1778 bp upstream
Tssr59718	transcription start site region 59718	1461 bp downstream
Tssr59719	transcription start site region 59719	1529 bp downstream