rs32459376 SNP Detail

Summary

• ID
  rs32459376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4540435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAACACA CCATACACAC
  ATACACACAC CATACACTCA CCTTGAAAAG AATATGTATC CAAACATATT TGAAACTTAT
  CCTAAAGAAG TTATCATTCC CTGAAAGACA TCCTTGACAC TGTCTGTCTA CAGTGAACGT
  CTTAATCAGG AACCCCTATC TTCAGAAAGT GTTGGCTGCC GAGAAATGGC TTTCCTAGAC
  Y
  CCGATGCTTA GATATAAGTC AGGTGCAGCT ATACTGGTCT GATGTATTTT CCTTTTTTCC
  CATTTTTTTC TATTATACAG AAAAAGACAA ATGAATGGGG CAAGACAATC ATTGAATACA
  AAACAAATAA GCCATCTCGC CTGCCGTTCC TTGACATTGC ACCTCTGGAC ATTGGTGGTG
  CTGACCAAGA ATTCCGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230172	MGP_WTSI_6_4490435	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32459376					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230172	MGP_WTSI_6_4490435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4540435 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	Intron
Tssr1770	transcription start site region 1770	1767 bp downstream
Tssr54730	transcription start site region 54730	1790 bp downstream
Tssr54731	transcription start site region 54731	1745 bp downstream
Tssr54732	transcription start site region 54732	1658 bp downstream
Tssr54733	transcription start site region 54733	961 bp downstream
Tssr54734	transcription start site region 54734	944 bp downstream
Tssr54735	transcription start site region 54735	933 bp downstream
Tssr54736	transcription start site region 54736	907 bp downstream
Tssr54737	transcription start site region 54737	890 bp downstream
Tssr54738	transcription start site region 54738	847 bp downstream
Tssr54739	transcription start site region 54739	835 bp downstream
Tssr54740	transcription start site region 54740	758 bp downstream
Tssr54741	transcription start site region 54741	419 bp downstream
Tssr54742	transcription start site region 54742	93 bp upstream
Tssr54743	transcription start site region 54743	108 bp upstream
Tssr54744	transcription start site region 54744	139 bp upstream
Tssr54745	transcription start site region 54745	151 bp upstream
Tssr54746	transcription start site region 54746	164 bp upstream
Tssr54747	transcription start site region 54747	195 bp upstream
Tssr54748	transcription start site region 54748	239 bp upstream
Tssr54749	transcription start site region 54749	408 bp upstream
Tssr54750	transcription start site region 54750	421 bp upstream
Tssr54751	transcription start site region 54751	429 bp upstream
Tssr54752	transcription start site region 54752	472 bp upstream
Tssr54753	transcription start site region 54753	494 bp upstream
Tssr54754	transcription start site region 54754	603 bp upstream
Tssr54755	transcription start site region 54755	1002 bp upstream
Tssr59718	transcription start site region 59718	286 bp downstream
Tssr59719	transcription start site region 59719	354 bp downstream