rs32460312 SNP Detail

Summary

• ID
  rs32460312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30237847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACGTTGTT TTGATCACCT
  TAATTTTGTA ATAGTAGATG ATTTTACTAC TGCTTCCTTT CTTACTTTAA TTTCAAGTAG
  GATTAGTTTG CTATTGTATT TACTTGACTC TGAGAAAATT TGACTGCAAG ATTCACCATT
  CCAGTCTACA TTACAAACAG TGATGTGAAG GAAGGGTCGT GATGTGAAGA TGTGAATTTT
  Y
  AGACATAACT AATATCAAAC ACAATCACAT ATGAAAACAT ACTCTCTTTG GTAGATTCAG
  TATAATACTT AATGTTTATA TTTCATATGT AGCAAAGAGC ATTTGAAAAA AAAAAAGATG
  GACTTCAGGG TGGCCATGGG TTGAGTGAAC CCTTCATCCG AAAGCATTGG ATGTAAGGAG
  GCTATTGGAA TTGCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39405784	mCV22996753	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		C
ss49433162	NES12619225	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C	C	C	C	C	C	T	C
ss147400335	ENSMUSSNP2585427	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32460312					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433162	NES12619225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30237847 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	1652 bp proximal