rs32465520 SNP Detail

Summary

• ID
  rs32465520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76986796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACACTCA ACTGCAAGGC
  CTGCAGAGCC AGGCTGAGCT TGCTTCTGAG GCATAGTCCT CTAGCTTTGA CGGAAGCCCA
  GGTGTGGAAG CCCCCGCCTG GCGGGGCACA GCAGGGCCAG TTGCCCCATG AGCTTGGTTG
  CTCACCTTGT TGCTCCAGAA GAGCATTCTG CCGCTTGAGG TCATCAATGT CTTGCTGGTG
  M
  GTATGGTTTT TCCTTCGCAT ATACTGGATA TACTCTGTTG CTTTGTCTAG GATTTGGGCC
  CGGGATGCCT GATGCAATAT GAGAAAAAAA ACAACAACAA AAAAAAACAC AGAACAAAAT
  AAAGACCAAG TCTGCATAGT AGGAGAACCA TGCCCTTCTT TGGCAACAGC ATGAGGGAAA
  GAAAGGAAAC AGGTGGGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47169705	NES11230776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32465520					SNP	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47169705	NES11230776	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76986796 () rs orientation: forward

Symbol	Name	Function Class
Gm47218	predicted gene, 47218	453 bp downstream
Max	Max protein	within coordinates
Rr468288	regulatory region 468288	1413 bp proximal
Tssr114005	transcription start site region 114005	1340 bp downstream
Tssr116763	transcription start site region 116763	50 bp downstream