rs32467927 SNP Detail

Summary

• ID
  rs32467927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116678948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAGGTCA CACCCTTGGG CAACTAGCCA CCCCTTCCGG
  GGCCCGGGAA GTAACAATAG CCACCTTCAC TCTGTGCCAG GCGCTCTCTT CCCGCGACCT
  Y
  AGAGCCTAAG GACTGCCCGT GTGGGGGAGG AGCCCCAATC CTTTCTCAAC AGACGGAATT
  TTCTTGGCCT GGTACTTTTT TTTTTTTACA ATTCAGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45651613	mCV22661469	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147281512	ENSMUSSNP5084692	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs32467927					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116678948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	96 bp distal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	243 bp upstream
Rr597993	regulatory region 597993	within coordinates
Tssr42929	transcription start site region 42929	864 bp upstream
Tssr42930	transcription start site region 42930	845 bp upstream
Tssr42931	transcription start site region 42931	264 bp upstream
Tssr42932	transcription start site region 42932	252 bp upstream
Tssr42933	transcription start site region 42933	230 bp upstream