rs32469777 SNP Detail

Summary

• ID
  rs32469777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9529154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG GAGAATTATG ATGACCATAT
  R
  ATGGATTCTC TGAATATAAA AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39406864	mCV23808794	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss49390560	NES12654049	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	A	A	G	G	A	G	G
ss147053923	ENSMUSSNP2772592	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32469777					SNP	G	G	A	G	A	G	G	A	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390560	NES12654049	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9529154 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	672 bp proximal
Rr499183	regulatory region 499183	305 bp distal
Rr499184	regulatory region 499184	750 bp proximal
Tssr130645	transcription start site region 130645	1992 bp downstream
Tssr130646	transcription start site region 130646	585 bp downstream
Tssr130647	transcription start site region 130647	565 bp downstream
Tssr130648	transcription start site region 130648	528 bp downstream
Tssr133701	transcription start site region 133701	1016 bp upstream
Tssr133702	transcription start site region 133702	980 bp upstream
Tssr133703	transcription start site region 133703	629 bp downstream
Tssr133704	transcription start site region 133704	670 bp downstream
Tssr133705	transcription start site region 133705	745 bp downstream
Tssr133706	transcription start site region 133706	782 bp downstream
Tssr133707	transcription start site region 133707	800 bp downstream
Tssr133708	transcription start site region 133708	964 bp downstream
Tssr133709	transcription start site region 133709	1066 bp downstream
Tssr133710	transcription start site region 133710	1243 bp downstream