rs32471700 SNP Detail

Summary

• ID
  rs32471700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136012145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG AGTGAATGCA GCATAGCCAA
  Y
  GCTGATGTTT CTTGGCCAGC TGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45652051	mCV25110922	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147564580	ENSMUSSNP238727	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321354904	CHEV_4_135840749	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32471700					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136012145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	986 bp proximal
Rr398613	regulatory region 398613	411 bp upstream
Rr602339	regulatory region 602339	1432 bp distal
Rr602340	regulatory region 602340	258 bp distal
Rr602341	regulatory region 602341	743 bp proximal
Rr602342	regulatory region 602342	1244 bp proximal
Tssr39694	transcription start site region 39694	182 bp downstream
Tssr39695	transcription start site region 39695	148 bp downstream
Tssr39696	transcription start site region 39696	117 bp downstream
Tssr39697	transcription start site region 39697	1227 bp upstream
Tssr39698	transcription start site region 39698	1281 bp upstream
Tssr39699	transcription start site region 39699	1344 bp upstream
Zfp46	zinc finger protein 46	mRNA-UTR