rs32473238 SNP Detail

Summary

• ID
  rs32473238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG CGAGTGGGGG TGGGGGGAAG
  R
  GTCCAGCGCT TCTCCAAAGT GCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45652069	mCV23912989	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147191117	ENSMUSSNP2789546	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321252870	CHEV_4_108506754	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32473238					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691346 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	535 bp upstream
Cpgi14564	CpG island 14564	10 bp distal
Cpgi14565	CpG island 14565	513 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	606 bp distal
Rr597225	regulatory region 597225	45 bp distal
Rr597226	regulatory region 597226	within coordinates
Tssr38313	transcription start site region 38313	461 bp upstream
Tssr38314	transcription start site region 38314	498 bp upstream
Tssr38315	transcription start site region 38315	560 bp upstream
Tssr38316	transcription start site region 38316	653 bp upstream
Tssr42738	transcription start site region 42738	552 bp upstream
Tssr42739	transcription start site region 42739	523 bp upstream
Tssr42740	transcription start site region 42740	90 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	529 bp upstream