rs32475983 SNP Detail

Summary

• ID
  rs32475983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:105534733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTCAC GTAGAGAGAA
  TAAAAGGAAA GAAGTGTGCG CATCTCTGAA TAATGTTTAG CAAGAGTGTT AGAAGTAATC
  TCACTCAGGC AGTATCATAA AGTGCCTCCT AAACAAAAAG TGGTAAGAGA ATACAATAGG
  AGTTGCCTGT CAGTTAATTC TCGATGGATC CAGTGGGTAA CTGACCTGCT TGGAAATGAC
  Y
  TTGAATGCTA GTGCTTTCAG ATGTGGTAGA TCGTCTTGTG AAACTTTCCC TTCAAGGTTC
  AGCCATTTGT CTTCTGTGTG TCAGGATCTT CGCATCCGAA CAAGACATTG CAGTTTACTG
  CCCAGATCAC TCATATTTTC GACTACAGGA AAACTGAAAG GAAAATCAGT GTTCTTGTAA
  CTTAAACCAC GGCAGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49358435	NES12561050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32475983					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49358435	NES12561050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105534733 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndfip2	Nedd4 family interacting protein 2			Intron
				Noncoding-Transcript-Variant
Rr404277	regulatory region 404277			815 bp downstream
Rr497187	regulatory region 497187			816 bp distal
Rr497188	regulatory region 497188			916 bp distal