rs32476828 SNP Detail

Summary

• ID
  rs32476828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:105533644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCGTGCT GTGCAGGTGT
  GGCAGCTGCC TGTGGGTCCC TGGAGCGAGC TACGGCTCCT CGAGCTGACT GAGGAGCTTA
  GGTCATTTCC TTTACCCATG GCTTTATTTA ATATGTGTCT TTTAGAGTTT GCTCAGTGAC
  AGTATATTGG TTTATATAAA TATATATATA TATATATATA TTCATGGATT TTGTACAGAA
  Y
  TTCCAGATTT TAGTAAAATT CCGTGAAATT ATATTTTTAC AAGTTATTTC TGTTTTACAA
  ATACTTCATA AATAGTAAAA AAAAATTGAT TCTTTTTTGT TTGTTTTTGG TATGCAAGAG
  CCTGGTTTGA TAAACATAGA TTTGTTTGTA ATTACTACCA TCTAGTGGTT ACTCTCCAGA
  CTGCAACTGG GTTTATATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49358440	NES12561114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32476828					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49358440	NES12561114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105533644 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndfip2	Nedd4 family interacting protein 2			Intron
				Noncoding-Transcript-Variant
Rr404277	regulatory region 404277			within coordinates
Rr497187	regulatory region 497187			21 bp proximal
Rr497188	regulatory region 497188			152 bp proximal