rs32476833 SNP Detail

Summary

• ID
  rs32476833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:105533057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTACAC CTAATGCTCA
  GTGAAAATGT ATTAGGTTAT GTGTGGCTTA TTCTAGGGTA AAATGAGAAA CCGTTTACTT
  ATGTAAAATG ATCGCCCAAA TTCAAAACTA GAGAATCACT CTTCAGGTGT TGAACTGCTT
  TTAGTCTGGA GGTCGGCTTA TCCCTTTCCC AGTTGGACAG GCTCCGTGCT TCTCTTCATG
  Y
  CATCTGTGCA ACCACAGAAG TGCGTGAGGA GTGGCAGGCA GTACGCTTTT CTTTTCCAAC
  TGAGTTTATA GTTACGTTGC TATCCAGTAT GTGCAGTATA TAAGTATTAA GCTTGTCTTG
  CAGTTTTAAT TGGGTAAGGT AGAGCCAAGG AAAAGGCAGC AAATTCATTG GTTTCAGATG
  GCTGCTTACT GATGCTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49358445	NES12561109	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	T	C		T	C	C	T		T
ss146763390	ENSMUSSNP668554	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss324799816	CHEV_14_105694840	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32476833					SNP	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49358445	NES12561109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105533057 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndfip2	Nedd4 family interacting protein 2			Intron
				Noncoding-Transcript-Variant
Rr404277	regulatory region 404277			561 bp upstream
Rr497187	regulatory region 497187			608 bp proximal
Rr497188	regulatory region 497188			739 bp proximal