rs32477285 SNP Detail

Summary

• ID
  rs32477285
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175458860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGAGAAA GGAAGACAGG
  AAGGAGGGAG AGAAAGCTTC AGGGACCTTG GAGAGGAACC AGGAATTAGC ACAGCAAACC
  ACTGCAAGAT GCTTGTCTCT GGACAAGAGA GATAGGCTCC TAAAGAGACA GAATCTACAA
  TATTACCCTT CTTTGTATGC CCTTGCCAAA TCTTTAACTT CATTCTGTGT GATATATAGC
  M
  TACTATAATG ACTCAGCCTT TTTCTAGCAC GTCTAACATA CTCTCCTACA GGGGCACTAT
  CGGGTGGTGT TTCCTTCCAG TCCCTACCCA AAGAAATGCC ATTTGTGTTC TCATCAGAAA
  TTGGAAAAAC CAATAAATCT TCATTGATGC TCTTATTTTA TTTTAATCAC AATACGATCT
  AGAAAAGAAG CACAACTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss45152074	mCV22956924	ABI	CRAMUS_MOUSE	f	SNP		C			A
ss46694123	NES10679154	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A	A		C
ss146323459	ENSMUSSNP3112239	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			A
ss320151878	CHEV_1_177561425	CHEVERUD	SCREENING_POP	f	SNP								C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs32477285					SNP	C	C	A	C	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694123	NES10679154	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175458860 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	899 bp upstream
Rr396618	regulatory region 396618	524 bp upstream
Tssr10313	transcription start site region 10313	674 bp upstream
Tssr10314	transcription start site region 10314	702 bp upstream
Tssr10315	transcription start site region 10315	721 bp upstream
Tssr10316	transcription start site region 10316	750 bp upstream
Tssr10317	transcription start site region 10317	770 bp upstream
Tssr10318	transcription start site region 10318	802 bp upstream
Tssr10319	transcription start site region 10319	810 bp upstream
Tssr10320	transcription start site region 10320	826 bp upstream
Tssr10321	transcription start site region 10321	847 bp upstream
Tssr10322	transcription start site region 10322	861 bp upstream
Tssr10323	transcription start site region 10323	875 bp upstream