rs32477708 SNP Detail

Summary

• ID
  rs32477708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:105532214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATGCTG CTTCGTGTGG
  GTTTCGCCTC CCGACTCAGA TGTCTGAGCT TGTACTGACT GAGCTGTCGA CCAGCCCTCA
  GCTTACCTTT CTTAACAGCA CCTACGATAA AGTAATGCTG CTAATGTCTT ATCTGTAGGA
  CCACTTGAGA GCATTAGTTG TTACTGAAGG TCAGATCATT GTAATTATTT TAGTGAACTG
  Y
  TTTGGTTTTT TTTTACAGAA CCAAGAGGAA GACTGTACGC CACGGGATGA CTTCAGTGAT
  GTAGAGCAGC TCAGAGTGGG CAACGACGGC ATTTTCATGC TGGCCTTTTT CAGTAAGTGA
  CCTTGTCCTA GTACTCTACT TTATATAAAT ATTTAAAATA ACTGAAGAAA AAAATACTAC
  TAACATGAGT ATACCTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49358451	NES12561103	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32477708					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49358451	NES12561103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105532214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm16259	predicted gene 16259			1759 bp upstream
Ndfip2	Nedd4 family interacting protein 2			Intron
				Noncoding-Transcript-Variant
Rr404277	regulatory region 404277			1404 bp upstream
Rr497187	regulatory region 497187			1451 bp proximal
Rr497188	regulatory region 497188			1582 bp proximal