rs32478362 SNP Detail

Summary

• ID
  rs32478362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118086747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCCGTA TTATTGCATC
  TGTACATAGT ACATGTTTCA GATCACTAAA TATTGATCAA AATTGATCGA AATCTCTTGT
  TTTTGTTGCC ACATGGCAAG AACAACTGTT CAGCATGGCA TTTAAATAAA ACATTAATAT
  TTTTTAAAAA ATTTACAAAC ACAATGCCCA TTAATTTAAT AATAATAATA AACTTTAAAA
  R
  TTTGAGGATG GATGAAGCTT TGGGTAATTA ATACAAAAAA AGAAAAAACC CTACAAGAAA
  GATACGTTTA TATAAGCTAT TCATATTTAT GATCCTAACC AGATTTATAC TTTAAAATAT
  TATCAAGACT TTTTAAAAAA GGGATTCCTT AGCTAGAAAT TTCTAGCTAA GCTAGAAATA
  GCTGGAAATT TGCCTCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47171667	NES11585862	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32478362					SNP	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171667	NES11585862	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118086747 () rs orientation: forward

Symbol	Name	Function Class
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	within coordinates
Rr654485	regulatory region 654485	801 bp proximal
Rr654486	regulatory region 654486	998 bp proximal
Tssr74438	transcription start site region 74438	1867 bp upstream
Tssr74439	transcription start site region 74439	12 bp downstream
Tssr74440	transcription start site region 74440	729 bp downstream