rs32479077 SNP Detail

Summary

• ID
  rs32479077
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118086982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGAA AAAACCCTAC
  AAGAAAGATA CGTTTATATA AGCTATTCAT ATTTATGATC CTAACCAGAT TTATACTTTA
  AAATATTATC AAGACTTTTT AAAAAAGGGA TTCCTTAGCT AGAAATTTCT AGCTAAGCTA
  GAAATAGCTG GAAATTTGCC TCTCCCCTGT TCTAACTTAA TGACTACAGA GGCAGCAACA
  K
  GCTGAATGTA GAAATCATGT GTGCATTATA CACACAGACA CATACACACA CACAGATACA
  GATACACACA GAGAAACACA CAAACACACA GACATACACA CACATACACA TGCACACACA
  CACACATGCA CAATCTTCCC TTGGCATTGG CTTTTTAAAG TAATTAAAAT CAAACCGACT
  GTGCAGTTTC AATCTTTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47171673	NES11585864	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32479077					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171673	NES11585864	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118086982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	1976 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	201 bp downstream
Rr654485	regulatory region 654485	566 bp proximal
Rr654486	regulatory region 654486	763 bp proximal
Tssr74439	transcription start site region 74439	193 bp upstream
Tssr74440	transcription start site region 74440	494 bp downstream