rs32479500 SNP Detail

Summary

• ID
  rs32479500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118088895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTGATT GCTTCTAATA
  ATTCGGGGTC AGAGACATCT GTGTATGAGA CCACCCAAGA TACTCTAATA GGTCTGCAGA
  AGATGCCACT GATATCTTAG GCCATAGAGC CTAGGACAGA ACATTTGTGC CATCAAATCC
  TGTGACATCC TTCAAATTTT CCCACACCTT GAACAGCTCT TCTTGAATTT AGCTGCCATC
  Y
  GCTCTCTCAT CTCATGGGAA AGGGGCATTT GGTCAGGTGG AGTGTAATCA GGGTTCATGG
  TTCATCTTCA GGGGAGCCCT GGATGCGTTG ACTCCGGGGT GCTGGACACC TGGCAAGGTA
  GCGGGGACCA CCGTAGACTC GGAGAAGCTG GGGCAACCTT CGCCACGTGG ACAGCAACCG
  CGCTGCTGCA AGCTCCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47171733	NES11585623	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32479500					SNP	C	C	C	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171733	NES11585623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118088895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	63 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr654485	regulatory region 654485	1039 bp distal
Rr654486	regulatory region 654486	1129 bp distal
Tssr74440	transcription start site region 74440	1384 bp upstream
Tssr74441	transcription start site region 74441	1794 bp downstream