rs32479982 SNP Detail

Summary

• ID
  rs32479982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118087457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCAACCG GGTGCCCCAA AGAGAGTTTG CAGAGTTCCC
  TCCACATAGC TAAGAAATGA AACAATGACC CCATTCATGT GACTATTTTT ATCTTCCAAC
  Y
  TTCACTTTAA GGAGTCTAAG GGAGCTCAGA TCTTTGTTGT TAAAAAAAAA AAATCCCTAA
  GTGTATTACT GAGACTGGCC ACACTTCCCA CGAGGAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47171688	NES11585714	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C	C	C	C	T	T	C	T	T	C	C
ss145780830	ENSMUSSNP869619	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32479982					SNP	C	C	C	T	C	C	C	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171688	NES11585714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118087457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	1501 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	676 bp downstream
Rr654485	regulatory region 654485	91 bp proximal
Rr654486	regulatory region 654486	288 bp proximal
Tssr74439	transcription start site region 74439	668 bp upstream
Tssr74440	transcription start site region 74440	19 bp downstream