rs32480613 SNP Detail

Summary

• ID
  rs32480613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24098436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGCAG AGGCAGGCGG
  ATTTCTGAGT TTGAGACCAG CCTGGTCTAC AGAGTGAGTT CCAGGACAGC CAGGGCTATA
  CAGAGAAACC CTGTCTCAAA ACAAACAAAC AAACAAACAA ACAAACAAAC AAATAACCAA
  GAGAGCTGAT TGTGGCGGCA CACACAGGTA GGTTATGCTG AAGAGGCAGA CACAGGAGGG
  Y
  AAGTTTGAGG TCAGGCTGAT GGACTCACGG TTTTTTTTCT TTAAGAAAGG AAAAGCAATA
  GGGGAGGTGG AACTTCTGCC TCTCAGCTGT CTTTCCATTG GGTGACTGCA CCCTCTGCCC
  AGTGGCCTTC CAGCTGCTTC AGGCTGTGCC CCTAGTCCTT TGAATGTTTG CCCCTTCTGT
  AGCCCTGCGA TCCGCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46149958	mCV25416632	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148598582	ENSMUSSNP1500431	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32480613					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24098436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	175 bp proximal
Gm74022	predicted gene, 74022	within coordinates
Rr643435	regulatory region 643435	1628 bp distal
Rr643436	regulatory region 643436	762 bp distal
Rr643437	regulatory region 643437	118 bp proximal
Rr643438	regulatory region 643438	619 bp proximal
Rr643439	regulatory region 643439	914 bp proximal
Rr643440	regulatory region 643440	1562 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	670 bp upstream
Tssr64959	transcription start site region 64959	595 bp upstream
Tssr64960	transcription start site region 64960	663 bp upstream
Tssr64961	transcription start site region 64961	802 bp upstream
Tssr64962	transcription start site region 64962	948 bp upstream
Tssr64963	transcription start site region 64963	966 bp upstream
Tssr64964	transcription start site region 64964	1002 bp upstream
Tssr71075	transcription start site region 71075	847 bp downstream