rs32480778 SNP Detail

Summary

• ID
  rs32480778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118087666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGTCTA AGGGAGCTCA
  GATCTTTGTT GTTAAAAAAA AAAAATCCCT AAGTGTATTA CTGAGACTGG CCACACTTCC
  CACGAGGAGA GAGGAAGACG AAGCTTTCTA AACTTGAACT GCTATTGGAA GTTGTCTGGA
  AGGCAGGAGG ATAGGAGGCA CTCGAGGATG GGATCCTCCC AACAGCAAGG GGCGCCCAGG
  M
  CAGGGAAGTT CAGAACTGAG AAGGGCAAAG ACTGTAAGCC AGCTCCCTCT TTTCTCCCTC
  TGCTCCTGTC GCCTATCTCT TCTGCCCACT GCTGGAGACT GACAGGTCTC CAAGCACACA
  CCTCATGCTA CTATTTTACA AGTCATAAGC AGAAGCAAGA ATTGACTGGC CTTCAATACG
  ATGTAAGGCT GCTTAGGCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47171694	NES11585716	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32480778					SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171694	NES11585716	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118087666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	1292 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	885 bp downstream
Rr654485	regulatory region 654485	within coordinates
Rr654486	regulatory region 654486	79 bp proximal
Tssr74439	transcription start site region 74439	877 bp upstream
Tssr74440	transcription start site region 74440	155 bp upstream