rs32482259 SNP Detail

Summary

• ID
  rs32482259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118088097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACA CTTTTGCCAG ACCTGTCTTA
  R
  TCAAGGATCT TTCCCTCTGC ATTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47171715	NES11585727	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A	A	A	A	A	A
ss145780873	ENSMUSSNP1112120	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32482259					SNP	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171715	NES11585727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118088097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	861 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	1316 bp downstream
Rr654485	regulatory region 654485	241 bp distal
Rr654486	regulatory region 654486	331 bp distal
Tssr74439	transcription start site region 74439	1308 bp upstream
Tssr74440	transcription start site region 74440	586 bp upstream