rs32488986 SNP Detail

Summary

• ID
  rs32488986
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30806901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAACGCTG TGAAGTGCCC
  AGAAAAGACA TGGGCACTCA TCAGGGTGAC TGTAAGGTAC CTGCAGTGTG AGAGAGAAGA
  AGTGGCCGAG AGAAAGTCCC TGTGGAAGAG ACACATGTGT GCACATGTGC CCCCTCCCTT
  CCCCTAAAGG AGGACACAAT CTATGCAACC CAGAATAGGA CCTATGCAGT TCTTGGGCTT
  W
  TCTCTGGGTG TCTTTCAATG AGATTCTCAC ACTAAACAAG GACTGCTCCT AATGTTGAGA
  GTGGCTAATG TCTGTCCAGG CTGCTGTCCC CAGGAAGAAT CCAAATGGTC ATTTACTGCT
  TAGATAAACC ATGCTGACTC AGCCCTTCCT TTGAAAACCT CCAAACCGGT TAGGTAAGAA
  GCCAAGGAAG CCTCGGTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47672337	NES10263157	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32488986					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47672337	NES10263157	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30806901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1188 bp distal
Mir5625	microRNA 5625	1542 bp downstream
Slc35f6	solute carrier family 35, member F6	within coordinates
Tssr45603	transcription start site region 45603	1625 bp downstream
Tssr45604	transcription start site region 45604	1559 bp downstream
Tssr45605	transcription start site region 45605	1528 bp downstream