rs32488988 SNP Detail

Summary

• ID
  rs32488988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30806599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGCCT CAGGGCAAGG
  CCTTTCTTTA TCTATTTGCA TCCAAAATCC TCAGTGTGCA TCATCTGTCC TTTGTCCAGT
  GTGCGTGTGG GCAGCAGCGA ACAATGCCCC TCTCCAAGTC TAGCCTCAGT TTCTTACTGG
  GCCTGGCTAG GAAAGAAAGT TGGTGTGGCG GCTCCCAGTG AAAGGCCTCC AGGCTTGTGC
  Y
  CTGGCTTTCC TGGGCCTCTG TGCATTGAGA AGCTGGCTGT GAGCCTCGTG TAGCCATTTC
  ATATTTACTT CTCAGGATTC TTGGATCTAA CAACAAAGTC TGTCAACGCT GTGAAGTGCC
  CAGAAAAGAC ATGGGCACTC ATCAGGGTGA CTGTAAGGTA CCTGCAGTGT GAGAGAGAAG
  AAGTGGCCGA GAGAAAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47672339	NES10263156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32488988					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47672339	NES10263156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30806599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	886 bp distal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	1961 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	1961 bp distal
Mir5625	microRNA 5625	1240 bp downstream
Rr609028	regulatory region 609028	1304 bp distal
Rr609029	regulatory region 609029	346 bp proximal
Rr609030	regulatory region 609030	1473 bp proximal
Slc35f6	solute carrier family 35, member F6	within coordinates
Tssr45603	transcription start site region 45603	1323 bp downstream
Tssr45604	transcription start site region 45604	1257 bp downstream
Tssr45605	transcription start site region 45605	1226 bp downstream