rs32489396 SNP Detail

Summary

• ID
  rs32489396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16188740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA CCCATGAAGC CAGAAGAGAG
  Y
  ACAAGAACCC CTCGGACTGG AGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46151739	mCV22944387	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss148386808	ENSMUSSNP6172003	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss322110721	CHEV_7_17040164	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32489396					SNP	T	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16188740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	1278 bp distal
Cpgi18378	CpG island 18378	194 bp proximal
Npas1	neuronal PAS domain protein 1	903 bp downstream
Rr400123	regulatory region 400123	1897 bp downstream
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	1847 bp downstream
Tssr64614	transcription start site region 64614	1784 bp downstream