rs32489582 SNP Detail

Summary

• ID
  rs32489582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58997684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atgattccc aacagtagca aaattagtta
  tgaagtagca acaaaaataa tctcatggtt gggatggggg tcaccacaag atggggagct
  gtgttaaagg cttgcagctt taagaaggtt gagaatcact gCTCTTGATA TTCTGCTGAC
  R
  TGTGAGTCAC AGACACATTA AAATATTAGC TCATAGGGTA CTTTTGTCAA AATTTACATC
  ACAGGATATT AATAAAATCA TCAGTTACCT CAAAATCTTT TTAAACAAGG AAAATGTGTA
  TCTGTTTAAC TACAGCAACA GATAAAATTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45153618	mCV24804568	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss49400971	NES12799969	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		G	A	A	A		A	G	A	A		G
ss149140943	ENSMUSSNP5112561	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss319738101	CHEV_1_59015369	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32489582					SNP	G	G	A	A	G	G	A	A	G	A	A	A	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400971	NES12799969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58997684 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	934 bp upstream
Rr366913	regulatory region 366913	1934 bp downstream
Rr371350	regulatory region 371350	within coordinates
Rr411536	regulatory region 411536	1907 bp distal
Rr411537	regulatory region 411537	279 bp distal
Trak2	trafficking protein, kinesin binding 2	within coordinates