rs32489930 SNP Detail

Summary

• ID
  rs32489930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC TTACTTGGGC CTCAGTTTGC
  W
  AATCTATATA GTGGGTATAA TACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46152012	mCV23847862	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149150480	ENSMUSSNP2622613	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32489930					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1102 bp proximal
Emp3	epithelial membrane protein 3	460 bp upstream
Gm45442	predicted gene 45442	276 bp downstream
Rr368318	regulatory region 368318	892 bp upstream
Rr368319	regulatory region 368319	1112 bp upstream
Rr400324	regulatory region 400324	222 bp downstream
Rr400325	regulatory region 400325	1493 bp upstream
Rr646609	regulatory region 646609	within coordinates
Rr646610	regulatory region 646610	187 bp proximal
Rr646611	regulatory region 646611	1318 bp proximal
Tssr2257	transcription start site region 2257	976 bp downstream
Tssr66661	transcription start site region 66661	1337 bp upstream
Tssr66662	transcription start site region 66662	1670 bp upstream
Tssr72490	transcription start site region 72490	1671 bp upstream
Tssr72491	transcription start site region 72491	1443 bp upstream
Tssr72492	transcription start site region 72492	1228 bp upstream
Tssr72493	transcription start site region 72493	1196 bp upstream
Tssr72494	transcription start site region 72494	1186 bp upstream
Tssr72495	transcription start site region 72495	1170 bp upstream
Tssr72496	transcription start site region 72496	1084 bp upstream
Tssr72497	transcription start site region 72497	981 bp upstream
Tssr72498	transcription start site region 72498	737 bp upstream
Tssr72499	transcription start site region 72499	552 bp upstream
Tssr72500	transcription start site region 72500	417 bp upstream
Tssr72501	transcription start site region 72501	1324 bp downstream
Tssr72502	transcription start site region 72502	1555 bp downstream