rs32489999 SNP Detail

Summary

• ID
  rs32489999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30803467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAACTTC TTGTCTGGTT
  ACTCTGGGAG GGGTACTTGA CTCTGGACCT TACACGTGGT AGGCTCTACG TGCTTTTTTG
  CCAATAAATC CTCCTGTGTA CCAGACTTCA GAGACAGCTG TTTGATGAGT GCTTACAGCA
  TGATATAATA AATTAGAATT CACTTTCTAA TGTGACTCTA GAGACAAAGA CTGCTCTGCT
  R
  GTGACATCAT GTCGGGCTAG TGACACCAAT GTCATTAGTA ATGTTTATGT CAGGCAAGTA
  TCCTTGGCCT GAACCTATGG GAAAATAGCC CAGAGTCCTA CTGTAGTCGA TAAGAACTGT
  CTCCCATGGG GAATAGGGGT GGGGAGGCCT GGCAGATGGT GTCCCTTTAG GACACAGTTG
  TGTTTCATCT AGTCTCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss47672353	NES10263218	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G		A	G
ss148186541	ENSMUSSNP5568500	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs32489999					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47672353	NES10263218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30803467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1610 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	1065 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1813 bp upstream
Rr609028	regulatory region 609028	1320 bp proximal
Slc35f6	solute carrier family 35, member F6	1810 bp upstream
Tssr45603	transcription start site region 45603	1798 bp upstream
Tssr45604	transcription start site region 45604	1812 bp upstream
Tssr45605	transcription start site region 45605	1882 bp upstream