rs32491981 SNP Detail

Summary

• ID
  rs32491981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154933919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAATCACGG TATGTCATTG AGGGAAGTCA GAGCAGGAAC
  CTGGAGGCAG AAACTGAAGC AGAGGCCCCT GAGACACACA TTGCTTACTG GCTTGCTCTC
  Y
  CAGCTCATGT TCAGCAGCTT TTCTTATACT TCCCAGGACC GCCTGCCTGC CCAGGGGTGG
  CTGTAGTGAC CCATGGCCGG CTGAGCTCCC CCACATTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45153924	mCV24610712	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145774498	ENSMUSSNP2439671	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32491981					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154933919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1489 bp proximal
Gm29282	predicted gene 29282	994 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	824 bp downstream
Rr372279	regulatory region 372279	876 bp downstream
Rr396410	regulatory region 396410	1385 bp upstream
Rr420924	regulatory region 420924	1656 bp distal
Rr420925	regulatory region 420925	38 bp distal
Rr420926	regulatory region 420926	1070 bp proximal
Rr420927	regulatory region 420927	1409 bp proximal
Tssr248	transcription start site region 248	1350 bp downstream
Tssr9521	transcription start site region 9521	1513 bp upstream
Tssr9522	transcription start site region 9522	1771 bp upstream
Tssr14331	transcription start site region 14331	1361 bp downstream
Tssr14332	transcription start site region 14332	1375 bp downstream
Tssr14333	transcription start site region 14333	1385 bp downstream