CTAGAGACCC ACAGCCTTCC TTCTAGAGCC TGCCCATCAG GACCTTACGG TGATGGGCGT ATGACTGGTC TCATGTGCTC ACCAGCCTTC CGACTCTTGT TTGTGATTGT GTCCAAAAAG GAAGCCACAG GGAGAGATGG TGACAGGCAG AGTCCTGAGC CAGCTACGGC TGAGTCCAGA GCCACAGACC TAGCAGGAAA K GAAGACAACT TGGCAGGCAG GGAGAAAACT TGACTGCAGT TACACAGCCA GCGGAGGGAC AGACTGTGAC ATACTTGAGA TTGGAGAAAG TGCTTCCGTA CAGAGCTAGG ACTCTGTCCC CCTTGAGCTA TCTTCCTTTT GGCAAGGGGC CCCTCTAGGA GGTGGTTTCT TGGCCCCTGA TAGTCCTGGT TGACTTTTCA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48173328 | NES12101355 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | G | T | T | G |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs32496928 | SNP | T | T | T | T | T | T | T | T | G | T | T | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48173328 | NES12101355 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr16:30752456 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
C330004M20Rik | RIKEN cDNA C330004M20 gene | 1366 bp downstream | ||||||
Gm46565 | predicted gene, 46565 | within coordinates | ||||||
Rr514366 | regulatory region 514366 | within coordinates | ||||||
Rr514367 | regulatory region 514367 | 937 bp proximal | ||||||
Rr514368 | regulatory region 514368 | 1981 bp proximal | ||||||
Tssr140722 | transcription start site region 140722 | 222 bp upstream | ||||||
Tssr140723 | transcription start site region 140723 | 130 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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