rs32497181 SNP Detail

Summary

• ID
  rs32497181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:85124375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG CCCGCGCTCT GCGCTTGCTC
  Y
  AGGCTTTGCG CTCCCAGGCC TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45655621	mCV22286163	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss146897500	ENSMUSSNP5042766	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321193471	CHEV_4_84852042	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32497181					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85124375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	within coordinates
Rr376767	regulatory region 376767	1623 bp upstream
Rr594659	regulatory region 594659	593 bp distal
Rr594660	regulatory region 594660	within coordinates
Rr594661	regulatory region 594661	456 bp distal
Rr594662	regulatory region 594662	1574 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	Intron
Tssr37705	transcription start site region 37705	1007 bp downstream
Tssr37706	transcription start site region 37706	989 bp downstream
Tssr37707	transcription start site region 37707	946 bp downstream
Tssr37708	transcription start site region 37708	910 bp downstream
Tssr37709	transcription start site region 37709	643 bp downstream
Tssr37710	transcription start site region 37710	622 bp downstream
Tssr37711	transcription start site region 37711	616 bp downstream
Tssr37712	transcription start site region 37712	453 bp downstream