rs32497744 SNP Detail

Summary

• ID
  rs32497744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30753343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCTGAG GGTGAGCGGG
  GCTTTAAGGA GAGGCCCCTG AAGCAACTTC CAGGCCAGCC ACTGACTACA GCTGCAGCCC
  TTCAGTGAGG ATGCCCTGGG TGTCCATAAA AGGCCCTCCC ACTCCCTTTT CAGGACGACC
  AGGTCCCTGA CCTGACCCAG CCCAGCACTC CTAGATTCCC AAATGGTTCT GGCTGTTGTG
  R
  TCTACGGCAC ACTGAAGCTG TCTTGTGTGC AACACGCTCA GTCCCACAAC CCACACACTT
  CCCGCCTGCG CTTTGCCAAC CCAATTCCCA CTCCTAACCG CCCCGTCAGA ATTCAAGGTC
  CCTTGGGCCT CTGCCTGCCC GCTGTTCTTG ACAGATGTGT ATTTATGTTT TTCAAACAAG
  AATAAAGCCA GCCACAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48173334	NES12101322	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32497744					SNP	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48173334	NES12101322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30753343 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	479 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Gm61246	predicted gene, 61246	1121 bp upstream
Rr514366	regulatory region 514366	807 bp distal
Rr514367	regulatory region 514367	50 bp proximal
Rr514368	regulatory region 514368	1094 bp proximal
Rr514369	regulatory region 514369	1608 bp proximal
Tssr140722	transcription start site region 140722	1109 bp upstream
Tssr140723	transcription start site region 140723	1017 bp upstream