rs32497746 SNP Detail

Summary

• ID
  rs32497746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30753513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATTCCC AAATGGTTCT
  GGCTGTTGTG ATCTACGGCA CACTGAAGCT GTCTTGTGTG CAACACGCTC AGTCCCACAA
  CCCACACACT TCCCGCCTGC GCTTTGCCAA CCCAATTCCC ACTCCTAACC GCCCCGTCAG
  AATTCAAGGT CCCTTGGGCC TCTGCCTGCC CGCTGTTCTT GACAGATGTG TATTTATGTT
  W
  TTCAAACAAG AATAAAGCCA GCCACAGTAG CAACCCTAAA ACAAATGAGA ATCATAAGTC
  ACCGTGAGTG TTCTCCCTGC TTGTGTCTTA AACAAGGTTC TTTGCAGGGA TAATAGACAC
  TCACTACATA GCCACAGGGG ACCAGGAGAG GGACAAACCA GAGGCAGTGG GGTGTGTGTA
  GCACCTCTAC CCCTGGCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss48173336	NES12101323	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs32497746					SNP	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48173336	NES12101323	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30753513 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	309 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Gm61246	predicted gene, 61246	951 bp upstream
Rr514366	regulatory region 514366	977 bp distal
Rr514367	regulatory region 514367	within coordinates
Rr514368	regulatory region 514368	924 bp proximal
Rr514369	regulatory region 514369	1438 bp proximal
Tssr140722	transcription start site region 140722	1279 bp upstream
Tssr140723	transcription start site region 140723	1187 bp upstream