rs32497748 SNP Detail

Summary

• ID
  rs32497748
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30753574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACGCTCA GTCCCACAAC
  CCACACACTT CCCGCCTGCG CTTTGCCAAC CCAATTCCCA CTCCTAACCG CCCCGTCAGA
  ATTCAAGGTC CCTTGGGCCT CTGCCTGCCC GCTGTTCTTG ACAGATGTGT ATTTATGTTT
  TTCAAACAAG AATAAAGCCA GCCACAGTAG CAACCCTAAA ACAAATGAGA ATCATAAGTC
  W
  CCGTGAGTGT TCTCCCTGCT TGTGTCTTAA ACAAGGTTCT TTGCAGGGAT AATAGACACT
  CACTACATAG CCACAGGGGA CCAGGAGAGG GACAAACCAG AGGCAGTGGG GTGTGTGTAG
  CACCTCTACC CCTGGCCTCT TGGCCCTCCC CACTCTTTCT TTGCCTTCCC AATGTTCTGA
  AATGCAGGTT GAGAGGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48173338	NES12101324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32497748					SNP	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48173338	NES12101324	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30753574 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	248 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Gm61246	predicted gene, 61246	890 bp upstream
Rr514366	regulatory region 514366	1038 bp distal
Rr514367	regulatory region 514367	within coordinates
Rr514368	regulatory region 514368	863 bp proximal
Rr514369	regulatory region 514369	1377 bp proximal
Tssr140722	transcription start site region 140722	1340 bp upstream
Tssr140723	transcription start site region 140723	1248 bp upstream