rs32498464 SNP Detail

Summary

• ID
  rs32498464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30754257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCCTC CCGTCCGCAG
  CCTCCACCAC TCGATGGCTC ACAGATCAGT ACAGTGTCTA CACAACAGAA TCAGGAGCTT
  TCAACATACC TCTCTCTGTG TTTGTACACA AGCACACTCA AGCCAGCAAG TCAGTCTGGG
  GCAGGCACAG CCTTTATAAG AGGCCCTCCT AGGTCGTTAA CAATGCAGCT GGATGGGATC
  Y
  GAAAGTCCGG AAGTAAAGGT TAGAGAAGGA ATCCCTCTTG CCAGGAAAGT ACCTGGCTGA
  TAGTCCAGGA GGACCCAGAG ACCTAGCACC CCACCACATG TCAACCACGG GTGGAGAGCA
  GCTCATTAAG GATGCTAAAG CCACCCGGAA AGGGGTTGCC AGGGAACCAG CTATCCACAC
  CAGCTCAAAC ACCCTCCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48173344	NES12101327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32498464					SNP	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48173344	NES12101327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30754257 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	within coordinates
Gm46565	predicted gene, 46565	within coordinates
Gm61246	predicted gene, 61246	207 bp upstream
Rr514366	regulatory region 514366	1721 bp distal
Rr514367	regulatory region 514367	within coordinates
Rr514368	regulatory region 514368	180 bp proximal
Rr514369	regulatory region 514369	694 bp proximal
Tssr140723	transcription start site region 140723	1931 bp upstream