rs32500004 SNP Detail

Summary

• ID
  rs32500004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65021650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAATATTT TAGGCTATCA AGATTGCTGA AATTCTTGGC
  CCCTGAAGAG ACAGAGCAGG CTGCCTGCCT TTCTAAACCA GAAAAGGATG TAAGGACACG
  Y
  GGAATTCAAC AAGTTCAATA GGCCACTGTG CAAACTTAGG CCAACTGTCT TGCTGAACCA
  AAAAAAAAAA AAAAAAAAAA TTAGGTAGAA AACTATTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46152863	mCV23737707	ABI	CRAMUS_MOUSE	f	SNP	C		C	C	T
ss144901084	ENSMUSSNP3597758	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32500004					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65021650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	308 bp distal
Gm57226	predicted gene, 57226	within coordinates
Rr647945	regulatory region 647945	898 bp distal
Rr647946	regulatory region 647946	589 bp distal
Rr647947	regulatory region 647947	within coordinates
Rr647948	regulatory region 647948	1472 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	469 bp downstream
Tssr72804	transcription start site region 72804	1018 bp upstream
Tssr72805	transcription start site region 72805	1002 bp upstream
Tssr72806	transcription start site region 72806	954 bp upstream
Tssr72807	transcription start site region 72807	615 bp upstream