rs32504078 SNP Detail

Summary

• ID
  rs32504078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA TTGTAGAAAA AAGGACAAAA
  Y
  GGAATAGTCA GGAAACAATG AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45156190	mCV23089485	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss60329454	NES15835611	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	C	C	C	C	C
ss145796628	ENSMUSSNP2786826	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32504078					SNP	C	C	T	T	T	C	T	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329454	NES15835611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267930 () rs orientation: forward

Symbol	Name	Function Class
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	646 bp downstream
Tssr14442	transcription start site region 14442	1041 bp upstream
Tssr14443	transcription start site region 14443	1022 bp downstream
Tssr14444	transcription start site region 14444	1040 bp downstream