rs32508369 SNP Detail

Summary

• ID
  rs32508369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30752265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGATTC TCCTTTAGCT
  CCAAGATGGC CACTCTCATT CCCCACACTC ACCTAACAGC TCTGCACTGG ATTCAAAGAC
  CACGCTCAGG ACATCATGAA GAACAATGGC AGCCACTGCC TCTTTCAACT GATGAGGAGT
  TGGATGACCA GAGAAGGGAA GCGATCTGCC CGGGGTCAGT CAGCATCACA GCTAGAGACC
  Y
  ACAGCCTTCC TTCTAGAGCC TGCCCATCAG GACCTTACGG TGATGGGCGT ATGACTGGTC
  TCATGTGCTC ACCAGCCTTC CGACTCTTGT TTGTGATTGT GTCCAAAAAG GAAGCCACAG
  GGAGAGATGG TGACAGGCAG AGTCCTGAGC CAGCTACGGC TGAGTCCAGA GCCACAGACC
  TAGCAGGAAA TGAAGACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48173322	NES12101352	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32508369					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48173322	NES12101352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30752265 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	1557 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Rr514366	regulatory region 514366	within coordinates
Rr514367	regulatory region 514367	1128 bp proximal
Tssr140722	transcription start site region 140722	31 bp upstream
Tssr140723	transcription start site region 140723	50 bp downstream