rs32513673 SNP Detail

Summary

• ID
  rs32513673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48955174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGGTTT GTCTGGCTTT
  GGCTTAAGAT GTGGTGGAGT TTTTGTTTGT TTGTTTGTTT GTTTGCTCTG TTTTGTTTTA
  TCTGATGGTT TCGGCTGGCA GGGATTGTAA ACTTTCCCCC AGAAGTCAGA GAGTGCTGTG
  GTCTGGTCAG TGCCTTCAGC ATCCAGTGGA TCAGGGTAAA ATAAACCCAT CGCATTTGGG
  R
  TTGGGGGGAA AGGTTCCCAC TTTGCAGATC CCATTCTGAG CTTGATATAT AAGAGCTCAA
  TAGAAAATAG GATGGATAAA CTGGAATTCC TACCTATTAG GGCAATCTCA TTAAAGATGC
  TATTTAAAAA CAACACCAGC AAAATAATGG ACACTGGGCC TAAGTCTTCA CATAATGAAG
  TATTTGTTAG ACAAGTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46154916	mCV23859155	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G	G
ss149216085	ENSMUSSNP4218767	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32513673					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48955174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav2	neuron navigator 2			Intron
				Noncoding-Transcript-Variant
Rr647052	regulatory region 647052			392 bp distal
Tssr66792	transcription start site region 66792			1538 bp downstream
Tssr66793	transcription start site region 66793			1307 bp downstream
Tssr66794	transcription start site region 66794			1148 bp downstream
Tssr66795	transcription start site region 66795			1138 bp downstream