rs32514925 SNP Detail

Summary

• ID
  rs32514925
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129230005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TCGCCCACTT CTTTGCCCTA
  M
  AGGTGCTCTG GCGTGATCAC AGTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45657181	mCV22717113	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss147438519	ENSMUSSNP319578	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss321312049	CHEV_4_129013456	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32514925					SNP	C	C	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129230005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	208 bp distal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	842 bp upstream
Rr367701	regulatory region 367701	545 bp downstream
Rr367702	regulatory region 367702	65 bp downstream
Rr600200	regulatory region 600200	870 bp distal
Rr600201	regulatory region 600201	190 bp distal
Rr600202	regulatory region 600202	529 bp proximal
Tssr39141	transcription start site region 39141	567 bp downstream
Tssr39142	transcription start site region 39142	225 bp downstream
Tssr39143	transcription start site region 39143	171 bp downstream
Tssr43492	transcription start site region 43492	948 bp upstream
Tssr43493	transcription start site region 43493	895 bp upstream
Tssr43494	transcription start site region 43494	835 bp upstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	within coordinates