rs32516585 SNP Detail

Summary

• ID
  rs32516585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGCAGTGCT CACCATGGAG CCCCTCCTAC CACTCACTGC AGTGCTCACC ATGGAGCCCC
  TCCCACCACT CACTGCAGTG CTCACCATGG AGCCCCTCCC ACCACTCACT GCAGTGCTCA
  CCATGGAGCC CCTCCCACCA CTCACTGCAG TGCTCATCAT GAAGCCCCTC CCACCACTCA
  CTGCAGTGCT CACCATGGAG CCCCTCCCAC CATTCACTGC AGTGCTCACC ATGGAGCCCC
  TCCCACCACT CACTGCAGTG CTCACCATGG AGCCCCTCCC ACCATTCACT GCAGTGCTCA
  Y
  CATGGAGCCC CTCCCACCAC TCACTGCAGT GCTCACCATG GAGCCCCTCC CACCACTCAC
  TGCAGTGCTC ACCACGGAGC CCAGCCTCTG CTTGAGTTTC TCCAGCACCT GGAGGCTGGG
  AAGTCCAACA GTCTCGCCGC TGGCCTGAAC ATCCTGTTCA GCGTGGGAAA AAAAATGTTG
  CTTCTGTTTT AAATAATCCC TTCCCATGAG CCACTGCTCT GATGGCAAGC TGTCCTTATC
  TTCAGTCAAG TGTTCCCTAG GGCCACACAG TGGTGAGGTC CCTGCAAGAG TCCCTTTAGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45657805	mCV25035751	ABI	CRAMUS_MOUSE	f	SNP	C	C		T
ss147462728	ENSMUSSNP7086482	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32516585					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662764 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	985 bp downstream
Tssr39333	transcription start site region 39333	970 bp downstream
Tssr39334	transcription start site region 39334	921 bp downstream
Tssr39335	transcription start site region 39335	903 bp downstream
Tssr39336	transcription start site region 39336	887 bp downstream
Tssr39337	transcription start site region 39337	860 bp downstream
Tssr39338	transcription start site region 39338	827 bp downstream
Tssr39339	transcription start site region 39339	780 bp downstream
Tssr39340	transcription start site region 39340	732 bp downstream
Tssr39341	transcription start site region 39341	714 bp downstream
Tssr39342	transcription start site region 39342	628 bp downstream
Tssr39343	transcription start site region 39343	607 bp downstream
Tssr39344	transcription start site region 39344	546 bp downstream
Tssr39345	transcription start site region 39345	509 bp downstream
Tssr39346	transcription start site region 39346	494 bp downstream
Tssr39347	transcription start site region 39347	39 bp upstream
Tssr39348	transcription start site region 39348	550 bp upstream
Tssr39349	transcription start site region 39349	595 bp upstream
Tssr43605	transcription start site region 43605	880 bp upstream
Tssr43606	transcription start site region 43606	621 bp upstream
Tssr43607	transcription start site region 43607	339 bp upstream
Tssr43608	transcription start site region 43608	683 bp downstream