rs32518558 SNP Detail

Summary

• ID
  rs32518558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25778021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCTAAG ACTGCTGCTG
  GTGTGTGACC TTGTGTGCCC TGGCCACAAT GGCAGGAGAC ACTAGGAACC TTAATGGCGA
  TCTGACAGTC ACCTGTTGAA TGTAGCCATA ACAAAGGAGG ATGAGGCTTG ACTCTGTGCT
  TTTGTGGTTT TCTAGTCAGA TATCCTGATT GGATTTTAGA ATGTCTATGG CAGTTGGACC
  R
  TGTAAAATGC CCTGGACTGA AAAGCCTTAT TGTGGGAGTT TGTAACAGAC TGCCAGTAGA
  AAGGAAACAG ATGTTGCCCC AAAAGGCAGG CCCTGACCTT TTTTTCCTAT TCTTTTCCTC
  TGACACTTGT CCCCCTTGTG GACAGGTCTT CCTTCGAGAA TCCTTGGAGC AGAAACTGGA
  AAAGAGGCGG GAAGAGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss39413324	mCV22644399	ABI	CRAMUS_MOUSE	f	SNP		G	A		A		A
ss51610558	NES14603634	PERLEGEN	MM_PANEL2	f	SNP	G			G		G	A	G	G	G	G
ss147356405	ENSMUSSNP1283013	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32518558					SNP	G	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51610558	NES14603634	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25778021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6971	CpG island 6971	1939 bp proximal
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	1538 bp downstream
Tssr130836	transcription start site region 130836	184 bp upstream