rs32519422 SNP Detail

Summary

• ID
  rs32519422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72900716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCCAG AATGAGGAAG
  ATCTTCAGTG TCCTAAAAAA AACTACTTTA AAGAGGTAAT GCAAAACTTC GAAAGAAAGG
  GAAAGGGAAA AAAAGGTAAA GAAAATAGAT TTATATGCCT ATAAAGTCTA CATGGAGTCT
  TGTGGGTGAG TACAAGCCCC TTGGTTTTCT CCACCTCTCA TCCTCCTCCA CAGAGGCTGC
  Y
  GGGCCAGCTT TGAGTCTAGT GAAATCAAGG GCCGAAGCCA CGCGCTTCTG AATTGCTTGT
  CACCCTGGAG AATCAAGTCT TTCCAGTGTT GGGGGTGCGT ACTGACTTCT TAAAAAAATC
  TTTAACAAGA GTAAAATTTG CACACATTCT GAGTTCACTT GTCTGCTGGG GGAAAACCTA
  TCTTCAATCA CTCACTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45157818	mCV23053110	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss144663680	ENSMUSSNP6369289	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32519422					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72900716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	808 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	1517 bp distal
Rr34509	regulatory region 34509	285 bp proximal
Tssr7342	transcription start site region 7342	807 bp upstream
Tssr12189	transcription start site region 12189	1744 bp upstream
Tssr12190	transcription start site region 12190	1248 bp upstream
Tssr12191	transcription start site region 12191	518 bp upstream
Tssr12192	transcription start site region 12192	38 bp upstream
Tssr12193	transcription start site region 12193	104 bp downstream
Tssr12194	transcription start site region 12194	284 bp downstream
Tssr12195	transcription start site region 12195	644 bp downstream
Tssr12196	transcription start site region 12196	738 bp downstream
Tssr12197	transcription start site region 12197	756 bp downstream
Tssr12198	transcription start site region 12198	772 bp downstream
Tssr12199	transcription start site region 12199	1657 bp downstream