rs32520972 SNP Detail

Summary

• ID
  rs32520972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118785850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCTCAAA ACGTTAATTG CTGTAAACCT ATAGACGGGA
  TTGACCTGCA GGTGGCGCTG CATTAAGACG AGACGCTGGC GGATACATGG CTTGGCAAAG
  Y
  CTCCAGTCTC TTTAGAGATC TCTCTCCATA AAGAAGAGTG GTTAATGCCC CGAGCTTTTG
  CATAGGCAAA GTGAATGGCC TGCCTCCTCA CCCTCATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47176937	NES11577404	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	T
ss145804478	ENSMUSSNP5140298	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32520972					SNP	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47176937	NES11577404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118785850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	1834 bp distal
Cpgi19632	CpG island 19632	1068 bp distal
Gm73654	predicted gene, 73654	419 bp downstream
Rr381384	regulatory region 381384	within coordinates
Rr654600	regulatory region 654600	1705 bp distal
Rr654601	regulatory region 654601	564 bp distal
Rr654602	regulatory region 654602	within coordinates
Rr654603	regulatory region 654603	39 bp distal