rs32522058 SNP Detail

Summary

• ID
  rs32522058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118785901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAACAA AACCTCGTGA
  GCTAAGTAAA GCAACCTCTA ATCGCTGCAA AGGCTCAAAA CGTTAATTGC TGTAAACCTA
  TAGACGGGAT TGACCTGCAG GTGGCGCTGC ATTAAGACGA GACGCTGGCG GATACATGGC
  TTGGCAAAGT CTCCAGTCTC TTTAGAGATC TCTCTCCATA AAGAAGAGTG GTTAATGCCC
  Y
  GAGCTTTTGC ATAGGCAAAG TGAATGGCCT GCCTCCTCAC CCTCATGTCT CTGCTCACTT
  GTCTGCTTCT CATTAACAAT CCTAATTAAG ATTGGCATCT CAATTATTCT TCACCCCAAA
  TCTTGTGCCC CCCCTGTCCT CCTCCCTGTA GGCTTAGTAC CATCCACCCT ACCCCATAGG
  ACCTGATTTG TCTTGTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47176943	NES11577406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32522058					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47176943	NES11577406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118785901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	1885 bp distal
Cpgi19632	CpG island 19632	1119 bp distal
Gm73654	predicted gene, 73654	470 bp downstream
Rr381384	regulatory region 381384	within coordinates
Rr654600	regulatory region 654600	1756 bp distal
Rr654601	regulatory region 654601	615 bp distal
Rr654602	regulatory region 654602	within coordinates
Rr654603	regulatory region 654603	90 bp distal