rs32522363 SNP Detail

Summary

• ID
  rs32522363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32905473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTAAAC CCAAGATGGG
  TGACTTTCGT GCGTTCCCTG TTTGTACACT GTCTAATGCT CTGTGTCAGG GATTAAATGT
  AGTTGAGGGA CAAGGATAGC AGGTGCTCAC AGTCACCTCT TATTACCAAG TGTCCAGAGG
  CACAGTAAAT ATGGCTGCTA TCTCTGAGTA GCACAAGAAG TCACAGGCAG GTTCATTTTC
  Y
  ACATGTCCAG CTAGAAAGCC TGGGCAAGCA TGAAGTATTC TCCACACAAG ATCCTCTCAG
  TCCTCCCCAG TTCCTCTTTT TTGTTCAGAA ATGTCTCTTA GGAACCTCAC CATAAACAAC
  GTCTAGAAAA GCCTGCAGCC CAGGGCATTC ACCTCCACGT TGAGTGTTAC ATGGATCCTG
  AGATGGCCTG TGCTGGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47677059	NES10272524	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32522363					SNP	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47677059	NES10272524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32905473 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	1086 bp downstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	1828 bp distal
Rr609421	regulatory region 609421	1635 bp distal
Rr609422	regulatory region 609422	1248 bp distal
Rr609423	regulatory region 609423	8 bp distal
Rr609424	regulatory region 609424	277 bp distal
Rr609425	regulatory region 609425	13 bp distal
Rr609426	regulatory region 609426	854 bp proximal
Tssr45795	transcription start site region 45795	1580 bp downstream
Tssr50589	transcription start site region 50589	1816 bp upstream
Tssr50590	transcription start site region 50590	1788 bp upstream
Tssr50591	transcription start site region 50591	1777 bp upstream